According to the three basic elements and the basic conditions of the organizational system proposed by the system organization theory, combined with the influence factors of the formation of the strategic alliance, the three main system elements and the influence factors of the logistics park organization system based on 4PL are constructed by the method of expert argumentation and scoring, and the specific measurement indicators and the questionnaire are designed respectively. Firstly,this paper investigate the logistics park in China by stratified sampling method, and the reliability and validity of the measurement index and the questionnaire were proved by KMO, Bartlett sphere test and factor analysis. Secondly, the regression analysis found that there are significant positive correlations between the logistics park and the settled logistics enterprise cooperation behavior, the logistics park management environment and the three system elements based on 4PL Logistics Park organization system, the two factors are the key factors influencing the innovation of logistics park organization system. Logistics park management is an important factor which affects the management efficiency and sustainable development of logistics park based on 4PL. Finally,the paper puts forward the innovation measures of logistics park organization system based on 4PL.